Rare Pediatric Diseases – Specialized Children’s Centers

Paediatric Rare Diseases (Seltene Kinderkrankheiten) in Germany: Specialised Centres and Advanced Care

What are rare diseases in children?

In Germany, a disease is classified as “rare” if it affects fewer than 5 out of 10,000 people. In children, these conditions are often genetic or congenital syndromes, and may include:

Type of disease Examples
Metabolic disorders Phenylketonuria (PKU), mucopolysaccharidoses
Neuromuscular disorders Spinal muscular atrophy (SMA), Duchenne muscular dystrophy
Rare immune disorders SCID (Severe Combined Immunodeficiency), Wiskott–Aldrich syndrome
Rare skin diseases Epidermolysis bullosa
Multiple congenital anomalies Syndromic conditions such as CHARGE syndrome or Rett syndrome

Specialised centres for children in Germany

Across Germany, numerous centres for rare diseases in children (Zentren für seltene Erkrankungen – ZSE) are located within major university hospitals. They offer:

  • State-of-the-art genetic diagnostics, including genome sequencing

  • Multidisciplinary care, involving paediatricians, geneticists, child neurologists, nutrition specialists and others

  • Cooperation with social workers, psychologists and specialised schools for educational support

  • Lifelong follow-up, where necessary, for chronic or progressive conditions

Some of the key centres include:

Centre City
Zentrum für Seltene Erkrankungen – Charité Berlin
ZSE für Kinder – Universitätsklinikum Tübingen Tübingen
ZSE für Kinder – Universitätsklinikum Heidelberg Heidelberg
ZSE München (LMU + TU clinics) Munich
ZSE Bonn – Kinderzentrum Bonn
DRK Kliniken – Special outpatient clinic for rare paediatric diseases Mainz

How does the diagnostic pathway start?

  • First, visit your paediatrician (Kinderarzt) and discuss all unusual or persistent symptoms.

  • Obtain a referral (Überweisung) to a ZSE specialising in paediatric rare diseases.

  • Undergo initial investigations, such as blood and urine tests, imaging and preliminary genetic testing.

  • Take part in a multidisciplinary case conference, where experts from different fields jointly discuss the findings and next steps.


Who pays for the costs?

  • Both statutory health insurance (GKV) and private health insurance (PKV) generally cover diagnostic and treatment costs if a medical referral is in place.

  • Certain complex genetic tests may require prior approval by the health insurance fund.


Support and counselling for parents

Families of children with rare diseases often face a high emotional, practical and financial burden. Important sources of support include:

  • Patient organisations, such as ACHSE e. V. (Alliance for Chronic Rare Diseases)

  • Diagnosis-specific self-help and support groups

  • Psychological and social counselling, often offered free of charge within the centres or via hospital social services

  • Educational support programmes, including inclusive nurseries and specialised schooling options for children with complex medical needs


The editorial team of this website strives to provide accurate information based on thorough research and multiple sources. Nevertheless, errors or incomplete details cannot be entirely ruled out. Please treat this article as an initial point of reference only and always consult the relevant authorities and qualified professionals for binding, case-specific advice.


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